The following gzipped tar package contains the source code for Version 1.0 of MCMCSALUT:
mcmcsalut.tgz(It also contains a README file.)
MCMCSALUT is based on a sequence evolution model that allows insertions and deletions of fragments containing more than one site. There are many options for the substitution model. For a desription of the model, the algorithm behind MCMCSALUT and application examples see
D.Metzler (2003) Statistical alignment based on fragment insertion and deletion
models.
Bioinformatics 19 pp. 490-499.
Supplementary figures for this paper are available from http://www.math.uni-frankfurt.de/~stoch/software/mcmcsalut/figures.html.
click here to see full size image